グループ関数では参照はサポートされていません

クエリで定義した列エイリアスを同じクエリで使用することはできません。次のようなものを試してください：

SELECT   *,
         TRIP1 / FUEL1 AS ECON1,
         TRIP31 / FUEL31 AS ECON31,
         OTHER COLUMNS....
FROM
(
    SELECT    v.V_VEHICLEID, 
              v.V_LICENSENO,
              ROUND((MAX(IF(DAY(WP_DATETIME) = 1, WP_ODOMETER, NULL)) - MIN(IF(DAY(WP_DATETIME) =     1,     WP_ODOMETER, NULL))) / 1000) AS TRIP1,
              ROUND(MAX(IF(DAY(WP_DATETIME) = 1, WP_FUELREAD, NULL)) - MIN(IF(DAY(WP_DATETIME) = 1,     WP_FUELREAD, NULL)),2) AS FUEL1,
              ROUND((MAX(IF(DAY(WP_DATETIME) = 31, WP_ODOMETER, NULL)) - MIN(IF(DAY(WP_DATETIME) = 31, WP_ODOMETER, NULL))) / 1000) AS TRIP31,
              ROUND(MAX(IF(DAY(WP_DATETIME) = 31, WP_FUELREAD, NULL)) - MIN(IF(DAY(WP_DATETIME) = 31, WP_FUELREAD, NULL)),2) AS FUEL31,
              OTHER COLUMNS...
    FROM      VEHICLES v
    JOIN      WAYPOINTS wp
    ON        wp.WP_VEHICLEID = v.V_VEHICLEID
    WHERE     MONTH(wp.WP_DATETIME) = '6' 
    AND       v.V_USER = 'tc'
    GROUP BY  wp.WP_VEHICLEID
) t